My projects are routinely upated at git repo https://github.com/dauss75/


Globus Genomics

  • Reproducible big data science: https://github.com/globusgenomics/genomics-footprint
    footprint workflow

  • Single-cell RNA (10X genomics cellranger galaxy wrapper): https://github.com/dauss75/galaxy_10xgenomics_single-cell
    cellranger workflow

  • SNP data based GDC cancer type classification using deep learning: https://github.com/dauss75/gdc_snp
    deep neural network

  • microbiome: https://github.com/dauss75/microbiome
  • mouse microarray: https://github.com/dauss75/mouse_microarray_analysis<

    • NGS Analysis

  • Data discretization
    data_discretization

  • Identification of potential regulatory SNPs for prostate cancer (PCa)
    Identification_of_potential_regulatory_SNPs_for_PCa

  • Identify risk SNPs
    Identify_risk_SNPs

  • Identifying a significant effect of CpG–SNP pairs on the overall survival
    Identifying_CpG–SNP

    • Machine Learning

  • NBmirTar
    NBmirTar
  • One-class classification
    one-class classification
  • SVM-RCE
    SVM-RCE

    • MD simulations for RNA 3D structure

  • RNA 4-way junction interconversion
    RNA_junction_interconversion

  • Intramolecular RNA–RNA long-range interactions
    Intramolecular_RNA–RNA_long-range_interactions

    • RNA junctions

  • modeling RNA junctions from 2D to 3D
    modeling_RNA_junctions_from_2D_to_3D

  • RNA junction to 3D graph
    RNA_junction_to_graph